rs10192766 chr2:88016474 A>G
- Sequence
tttaatatagcgttcatcaaacag[A/G]agaacataccagatattaaactga
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) HEK293T (embryonic kidney) MOLT-4 (Adult T acute lymphoblastic leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- CDK9_HUMAN MAF_HUMAN BRD4_HUMAN CTBP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK9_HUMAN | 1.70 | -0.64 | 1.00 | n/a | n/a | |||
| MAF_HUMAN | 0.31 | 3.45 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.45 | 1.74 | 1.45 | n/a | n/a | |||
| CTBP1_HUMAN | 2.59 | -0.42 | 2.00 | n/a | n/a | |||
| ELL2_HUMAN | -0.00 | 1.97 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 13
Motif analysis
Genetic associations
GRASP acute lung injury following major trauma, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, birth weight, total serum bilirubin
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid