rs10192799 chr2:158232768 C>T

Sequence
tccccataagccattaagataaag[C/T]acatttttattccattttctagat
ASB in cell types
VCaP (prostate carcinoma) LNCaP95 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN HXB13_HUMAN FOXA1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.81 0.21 5.7·10-61.00 2.06 4.68 Discordant
HXB13_HUMAN 2.29 -0.36 1.2·10-31.00 2.00 n/a No Hit
FOXA1_HUMAN 1.41 0.11 2.2·10-31.00 1.89 n/a No Hit
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Motif analysis

ANDR_HUMAN Discordant
ANDR_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  microalbuminuria,  primary rhegmatogenous retinal detachment,  total cholesterol
GTEx eQTL Whole_Blood

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