rs10195398 chr2:171416180 A>C
- Sequence
tagtacttgttaatcatcagacag[A/C]aaacacagatggtaccagtcaggt
- ASB in cell types
- foreskin keratinocyte HCASMC (Human coronary artery smooth muscle cells) primary B-CLL cells THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- TCF21_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 0.80 | n/a | 3.00 | -1.04 | Weak Concordant | |||
| BRD4_HUMAN | 2.82 | -0.55 | 2.25 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Whole_Blood