rs10196002 chr2:170092634 T>G
- Sequence
acacaaaacttgcacacaaatgat[T/G]acacagcattattcataatagtga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- TIF1A_HUMAN NF2L1_HUMAN KDM1A_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TIF1A_HUMAN | -1.95 | 3.35 | 1.00 | n/a | n/a | |||
| NF2L1_HUMAN | -3.61 | 3.29 | 1.00 | 6.87 | Concordant | |||
| KDM1A_HUMAN | -2.13 | 2.23 | 1.00 | n/a | n/a | |||
| CEBPB_HUMAN | -1.91 | 2.40 | 1.00 | -1.71 | Weak Discordant | |||
| NR2C1_HUMAN | -2.15 | 2.42 | 1.00 | n/a | No Hit |
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Motif analysis
