rs10198426 chr2:172704674 T>C
- Sequence
aaacccagatgcttatgtgcttta[T/C]tttagcacgtacccacctgataag
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line) HCT-116 (colon carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.66 | 0.02 | 1.19 | n/a | No Hit |
Items per page:
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Colon_Transverse, Heart_Atrial_Appendage, Muscle_Skeletal, Whole_Blood