rs10198822 chr2:170679815 C>T
- Sequence
cgtcatctcacctctcccttcccc[C/T]aatcccaaacggacaggacaggca
- ASB in cell types
- iPS-derived dermal fibroblasts VCaP (prostate carcinoma)
- ASB for transcription factors
- RARA_HUMAN NFIB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 1.76 | -0.68 | 1.00 | -0.28 | Weak Concordant | |||
| NFIB_HUMAN | 0.80 | -0.75 | 1.00 | n/a | No Hit |
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Motif analysis
