rs10199636 chr2:235136224 A>C
- Sequence
gccacgttccagtaggagaaatga[A/C]gttcccggggacggaagaagatgg
- ASB in cell types
- GBM39 (Human brain tumor) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) renal cortex
- ASB for transcription factors
- SMC3_HUMAN CTCF_HUMAN ZN189_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 3.62 | 0.59 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.91 | 0.49 | 1.30 | n/a | No Hit | |||
| ZN189_HUMAN | -2.74 | 3.05 | 1.00 | 2.25 | Concordant | |||
| STAG1_HUMAN | 1.10 | 0.05 | 1.08 | n/a | n/a | |||
| CREB1_HUMAN | -2.17 | 2.52 | 1.00 | 4.32 | Concordant |
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Motif analysis
