rs10205331 chr2:54572423 G>T
- Sequence
aaaacgaacacagcttttctaacc[G/T]cgagtgtctttgtttacagagata
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) SUM149PT (Inflammatory breast carcinoma)
- ASB for transcription factors
- TLE3_HUMAN TAL1_HUMAN FOXA2_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TLE3_HUMAN | 3.11 | n/a | 2.00 | n/a | n/a | |||
| TAL1_HUMAN | 2.00 | -0.24 | 1.50 | n/a | No Hit | |||
| FOXA2_HUMAN | 0.92 | 0.08 | 1.47 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.26 | -1.71 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.31 | 0.31 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood