rs10205410 chr2:54572462 G>T
- Sequence
tacagagataacagtgtgagtaat[G/T]ctttgctagaagccaggcagttaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) TF-1 (erythroleukemia) SUM149PT (Inflammatory breast carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ATF7_HUMAN TLE3_HUMAN GATA2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.79 | -0.07 | 1.85 | n/a | No Hit | |||
| ATF7_HUMAN | 3.51 | n/a | 2.00 | n/a | No Hit | |||
| TLE3_HUMAN | 2.52 | -5.39 | 2.00 | n/a | n/a | |||
| GATA2_HUMAN | 2.56 | -0.80 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.06 | -1.74 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood