rs10206678 chr2:106868396 C>G
- Sequence
ctcctcacaggctgccctctacag[C/G]ttacaaagtgcattcatgcaccgc
- ASB in cell types
- GM23338 glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.47 | 2.60 | 1.92 | 4.30 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Coronary, Brain_Anterior_cingulate_cortex_BA24, Esophagus_Gastroesophageal_Junction, Lung, Testis