rs10209110 chr2:100056230 C>T

Sequence
tgaaatcaatattcactctctatc[C/T]ggcattcccttcatgtatcagacg
ASB for transcription factors
BRD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 0.10 1.55 1.000.04 1.75 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI rheumatoid arthritis,  rheumatoid arthritis (acpa-positive)
GRASP college completion,  fasting insulin,  hdl cholesterol,  rheumatoid arthritis,  rheumatoid arthritis, cyclic citrullinated peptide (ccp) negative,  rheumatoid arthritis, cyclic citrullinated peptide (ccp) positive,  total cholesterol,  years of education
Finemapping rheumatoid arthritis
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Lung,  Thyroid,  Whole_Blood

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