rs10211356 chr2:24163342 C>A

Sequence
ctcctgaggaccttagtgatgtac[C/A]gtagaaacagatgacagctgggga
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
RFX5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX5_HUMAN 4.23 n/a 1.5·10-151.00 1.00 -2.70 Concordant
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Motif analysis

RFX5_HUMAN Concordant
RFX5_HUMAN pic

Genetic associations

GRASP lp-pla2 activity,  microalbuminuria,  total cholesterol,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Testis,  Thyroid

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