rs10212596 chr3:124853768 T>C
- Sequence
atgttggtttcctggttttgagaa[T/C]gtacttttgttatattaagatgct
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.53 | 0.01 | 1.42 | n/a | No Hit | |||
| ANDR_HUMAN | 1.93 | -0.69 | 1.67 | -1.62 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Whole_Blood