rs10219531 chr12:130761976 G>A

Sequence
cccctggacagccatgcagaaccc[G/A]ccctgtgcaggcattggagggccg
ASB in cell types
MS-1 (Small cell lung carcinoma) GM19099 (female B-cells Lymphoblastoid Cell Lines)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
MS-1 (Small cell lung carcinoma) 1.27 -2.21 7.8·10-51.00 1.33
GM19099 (female B-cells Lymphoblastoid Cell Lines) 1.92 -0.68 4.7·10-31.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP acute lung injury following major trauma,  obesity with early age of onset (age >2)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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