rs10220446 chr14:45610490 G>A
- Sequence
gagctcttcctgcagatggcactg[G/A]tgttacttggataaagaacatttt
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) bipolar neuron HUES64 (embryonic stem cells) GM23338
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.95 | 0.03 | 1.29 | -0.93 | Weak Concordant | |||
| RAD21_HUMAN | 1.90 | 0.07 | 1.31 | n/a | n/a | |||
| STAG1_HUMAN | 2.49 | 0.58 | 1.12 | n/a | n/a | |||
| SMC3_HUMAN | 2.01 | -3.08 | 1.50 | n/a | n/a |
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Motif analysis
