rs10225507 chr7:27130964 C>T

Sequence
cgccccgtgccccacgtgcagcgc[C/T]cccaccaatgggcgcaccgcgcgc
ASB in cell types
HepG2 (hepatoblastoma) HEK293 (embryonic kidney)
ASB for transcription factors
TYY1_HUMAN ZBT17_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 3.44 0.23 1.1·10-51.00 1.00 n/a No Hit
ZBT17_HUMAN -1.48 1.78 1.000.04 1.00 -3.85 Discordant
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Motif analysis

ZBT17_HUMAN Discordant
ZBT17_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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