rs10231452 chr7:54713530 A>C

Sequence
ttgtagattagtatttactgagac[A/C]tgcgtgaccttggtttatattgtt
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN A2NVP9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.34 1.76 1.003.5·10-7 1.46 n/a No Hit
ANDR_HUMAN 0.49 1.39 1.004.9·10-6 1.55 n/a No Hit
A2NVP9_HUMAN -3.90 2.58 1.003.1·10-3 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  ldl cholesterol
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia,  Muscle_Skeletal,  Thyroid

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