rs10240006 chr7:5773849 G>A
- Sequence
ccaaagtcctgggataacaggcga[G/A]tcaccgtgcctggccccaagccaa
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- SMCA4_HUMAN GCR_HUMAN TF65_HUMAN NFE2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | 1.52 | -0.05 | 1.95 | n/a | n/a | |||
| GCR_HUMAN | 1.07 | 0.20 | 1.21 | n/a | No Hit | |||
| TF65_HUMAN | 2.33 | -1.10 | 2.00 | n/a | No Hit | |||
| NFE2_HUMAN | 1.96 | -0.80 | 3.17 | -1.95 | Weak Concordant | |||
| ZN316_HUMAN | 2.16 | 0.56 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Small_Intestine_Terminal_Ileum, Testis