rs10410533 chr19:18046183 T>C
- Sequence
cagcctcccaaagtgctgggatta[T/C]aggcatgagtcaccgcgcctggca
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) TTC-1240 (Rhabdoid tumor of the kidney) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- CDN1B_HUMAN JUN_HUMAN MBD3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | -1.50 | 2.02 | 2.33 | n/a | n/a | |||
| JUN_HUMAN | 0.56 | 2.06 | 2.25 | n/a | No Hit | |||
| MBD3_HUMAN | n/a | 2.88 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood