rs10425 chr6:26056321 A>G
- Sequence
gatgagctctgacaccgggggacc[A/G]gacgccttacgaggcgtaccccca
- ASB in cell types
- MM1.S (plasma cell myeloma) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- MBD4_HUMAN FOXK2_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 2.49 | -0.14 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | -0.34 | 2.56 | 1.75 | n/a | No Hit | |||
| RBBP5_HUMAN | -4.68 | 2.15 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP autism, coronary artery disease (cad), cystatin c in serum, height, ldl cholesterol, mean corpuscular hemoglobin concentration (mchc), serum urate, triglycerides change with statins, uric acid, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood