rs10426 chr19:51014542 G>A

Sequence
ctctcagaggctgggtgatgaccg[G/A]cttcctggcttctctggaataaac
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN -0.24 1.67 1.000.01 1.00 2.12 Concordant
Items per page:
1 – 1 of 1

Motif analysis

SPI1_HUMAN Concordant
SPI1_HUMAN pic

Genetic associations

GRASP asthma,  hypertension (early onset hypertension),  obesity with early age of onset (age >2),  waist hip ratio,  years of education
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Heart_Atrial_Appendage,  Ovary,  Skin_Sun_Exposed_Lower_leg

Download