rs1052571 chr1:15524118 G>A
- Sequence
ctgaacagctcgcggctcagcagg[G/A]cgtcccagagctggtccacctgca
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) keratinocytes neural cell
- ASB for transcription factors
- ZBT26_HUMAN SNAI2_HUMAN MNT_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 4.18 | n/a | 2.00 | n/a | No Hit | |||
| SNAI2_HUMAN | n/a | 3.77 | 1.50 | n/a | No Hit | |||
| MNT_HUMAN | 2.49 | -2.78 | 1.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 2.54 | -0.95 | 1.00 | n/a | n/a | |||
| NCOR1_HUMAN | 3.01 | -2.70 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, fasting blood glucose, serum creatinine, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood