rs1053329 chr2:73234355 C>A
- Sequence
gtctcggagaagaggggagagtgg[C/A]gggccgctgaataagcttccaaaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- FOXK2_HUMAN ZFX_HUMAN MNT_HUMAN T2FA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -0.59 | 2.92 | 1.88 | n/a | No Hit | |||
| ZFX_HUMAN | -1.23 | 1.94 | 1.25 | n/a | No Hit | |||
| MNT_HUMAN | -0.48 | 1.79 | 2.00 | n/a | No Hit | |||
| T2FA_HUMAN | n/a | 3.48 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 0.43 | 2.33 | 1.83 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Testis, Thyroid