rs1054623 chr19:8521202 C>A
- Sequence
ccccccctccccaactgtgcctgg[C/A]actttgccaacagcacaggactca
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- LCORL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LCORL_HUMAN | 2.62 | -2.29 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP amyotrophic lateral sclerosis (als), chronic kidney disease, hdl cholesterol, serum creatinine, sporadic creutzfeldt-jakob disease, triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid