rs1055479 chr8:26383130 A>G
- Sequence
ccgcagtcctgccagctgtccgac[A/G]atgtcgtcccacctagtcgagccg
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116-RAD21-mAC HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- NIPBL_HUMAN ATF1_HUMAN ESR1_HUMAN ZN341_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NIPBL_HUMAN | -0.96 | 2.76 | 1.00 | n/a | n/a | |||
| ATF1_HUMAN | 1.73 | n/a | 2.00 | 0.75 | Weak Discordant | |||
| ESR1_HUMAN | -0.12 | 1.27 | 1.30 | n/a | No Hit | |||
| ZN341_HUMAN | 2.54 | -1.75 | 2.00 | 1.37 | Weak Discordant | |||
| RBM25_HUMAN | 0.47 | 1.47 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, infant head circumference, ldl cholesterol, urinary albumin-to-creatinine ratio