rs107588 chr7:108181304 G>A
- Sequence
tggctgcctatcagtaaaaaatat[G/A]aaatcagtgcctctcaagaacaaa
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) upper lobe of left lung hASC (preadipocytes)
- ASB for transcription factors
- KDM1A_HUMAN CREB1_HUMAN HDAC1_HUMAN GFI1B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 1.25 | -0.89 | 1.25 | n/a | n/a | |||
| CREB1_HUMAN | 2.07 | -0.79 | 1.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.29 | -2.57 | 1.50 | n/a | n/a | |||
| GFI1B_HUMAN | 2.12 | -0.54 | 1.00 | -0.18 | Weak Concordant |
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Motif analysis
