rs10776568 chr10:49408636 C>G
- Sequence
agcattttgttacgtaaatgagcc[C/G]cagctcccctactggctggaccag
- ASB in cell types
- K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN HLF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.27 | 3.48 | 1.69 | n/a | No Hit | |||
| STAG1_HUMAN | -0.76 | 2.17 | 1.25 | n/a | n/a | |||
| RAD21_HUMAN | -3.06 | 3.12 | 1.00 | n/a | n/a | |||
| HLF_HUMAN | -5.08 | 3.10 | 1.50 | n/a | No Hit | |||
| RFX1_HUMAN | -3.27 | 2.09 | 2.75 | n/a | No Hit |
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