rs10788998 chr1:55233350 G>A
- Sequence
tctggtttgaatgcttctgacgcc[G/A]tgattggtttagactcaatctcac
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- CAVN1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CAVN1_HUMAN | n/a | 3.52 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP paternal transmission distortion, primary rhegmatogenous retinal detachment, stabilized warfarin dose, suicide attempts in bipolar disorder, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid