rs10815490 chr9:6962574 T>C
- Sequence
aatcctataaatgttttcagcatt[T/C]acattttcacatagtaaatttttt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.99 | -0.33 | 1.58 | -3.68 | Concordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), fasting insulin, homa-ir, infant head circumference, ldl cholesterol, obesity (body mass index (bmi)), rheumatoid arthritis