rs10817260 chr9:112066052 C>T
- Sequence
gaggaaatcaaggctcaggcaggc[C/T]gagtcacaccactagaagacggcc
- ASB in cell types
- BEAS-2B (bronchial epithelium) SK-N-SH (neuroblastoma) HCT-116 (colon carcinoma) HS-ES-2M (Epithelioid sarcoma)
- ASB for transcription factors
- GCR_HUMAN GATA3_HUMAN SMRC1_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.35 | 1.74 | 1.88 | n/a | No Hit | |||
| GATA3_HUMAN | 0.10 | 1.89 | 1.50 | n/a | No Hit | |||
| SMRC1_HUMAN | -2.02 | 2.88 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | -1.49 | 1.88 | 1.00 | n/a | n/a | |||
| HIF1A_HUMAN | n/a | 2.64 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP birth weight, hdl cholesterol, ldl cholesterol, mitral annular calcium, refractive error, total cholesterol, triglycerides