rs10818938 chr9:124286958 G>A

Sequence
tcactcccctcttccttcctgccc[G/A]aaaggccctggctcacctgggatc
ASB in cell types
TMD8 (diffuse large B-cell lymphoma) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ELF1_HUMAN -1.78 2.24 1.000.05 1.00 -0.91 Weak Discordant
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Motif analysis

ELF1_HUMAN Weak Discordant
ELF1_HUMAN pic

Genetic associations

GRASP body mass index (bmi),  fasting blood glucose,  hdl cholesterol,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Ovary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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