rs10818943 chr9:124325461 C>T
- Sequence
ctgccctgaccagcaggcccacag[C/T]gccgcctctgcctgctttggggaa
- ASB in cell types
- HUES64 (embryonic stem cells) GM19240 (B cells Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.28 | -2.67 | 2.58 | n/a | n/a | |||
| CTCF_HUMAN | 1.89 | -0.74 | 2.17 | n/a | No Hit | |||
| RAD21_HUMAN | 3.12 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), fasting blood glucose
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Ovary, Prostate, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood