rs10819148 chr9:126364215 T>C

Sequence
caatgtgctttgagagctgagtaa[T/C]agagtacataagaagagtgactta
ASB in cell types
22RV1 (prostate carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN FOS_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.34 -0.07 6.4·10-41.00 1.60 0.58 Weak Discordant
ANDR_HUMAN 2.26 -0.92 7.2·10-41.00 1.83 n/a No Hit
FOS_HUMAN 1.04 n/a 6.1·10-31.00 1.50 0.63 Weak Discordant
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Motif analysis

FOXA1_HUMAN Weak Discordant
FOXA1_HUMAN pic

Genetic associations

GRASP autism,  hip bone mineral density (bmd),  premature ovarian failure,  spine bone mineral density (bmd)
GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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