rs10819291 chr9:127424421 C>T
- Sequence
tctggcgctggagccaggacctgg[C/T]gttgggcggtacttggacagcggt
- ASB in cell types
- breast tumor monocytes from periferal blood HeLa (cervical adenocarcinoma) thymus-derived CD34+ cells
- ASB for transcription factors
- ESR1_HUMAN BC11B_HUMAN SRBP2_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.97 | n/a | 1.67 | n/a | No Hit | |||
| BC11B_HUMAN | 2.01 | -1.70 | 2.00 | n/a | n/a | |||
| SRBP2_HUMAN | 2.65 | n/a | 3.50 | -1.15 | Weak Concordant | |||
| BRD4_HUMAN | 1.02 | -0.15 | 1.36 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood