rs10822806 chr10:66322633 G>A
- Sequence
caaagccttgcaaaacaaacaagt[G/A]ccaggaaaagaacaaatcctggtt
- ASB in cell types
- 22RV1 (prostate carcinoma) liver VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN RAD21_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | n/a | 3.00 | 2.00 | 1.21 | Weak Concordant | |||
| RAD21_HUMAN | 2.79 | -2.86 | 1.00 | n/a | n/a | |||
| FOXA1_HUMAN | -0.48 | 1.25 | 1.63 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP neuroblastoma (brain cancer), obesity with early age of onset (age >2), rheumatoid arthritis, systolic blood pressure (sbp)