rs10823361 chr10:69408695 C>A
- Sequence
gtcaggctctggccccagacttcg[C/A]gcgaaggcagcttccgcaagcttc
- ASB in cell types
- RH4 (alveolar rhabdomyosarcoma) K562 (myelogenous leukemia) erythroid progenitors HL-60 (acute myeloid leukemia)
- ASB for transcription factors
- SUMO2_HUMAN ILF3_HUMAN INT11_HUMAN INT13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SUMO2_HUMAN | 1.98 | -0.75 | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 1.87 | -1.22 | 1.00 | n/a | n/a | |||
| INT11_HUMAN | 0.47 | 1.89 | 2.00 | n/a | n/a | |||
| INT13_HUMAN | 0.07 | 1.58 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.85 | 0.94 | 1.52 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood