rs10823362 chr10:69408780 T>C

Sequence
taagggcggctccccagggcgggg[T/C]caggccccgtcccgcccccgtccc
ASB in cell types
GM12892 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines) RWPE2
ASB for transcription factors
STAG1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 0.16 1.33 1.007.7·10-3 1.10 n/a n/a
CTCF_HUMAN 0.55 0.83 1.000.02 1.53 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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