rs10823379 chr10:69458934 C>T

Sequence
ggaataaccacctgccctcctgcc[C/T]ggaggcctttcttcccaggtgact
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN ZN217_HUMAN GRHL2_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.40 -0.66 8.0·10-51.00 1.75 n/a No Hit
ZN217_HUMAN 2.73 -0.31 4.8·10-31.00 1.00 n/a n/a
GRHL2_HUMAN 0.87 0.18 0.031.00 1.88 n/a No Hit
ESR1_HUMAN 0.80 0.30 0.031.00 1.88 n/a No Hit
PKNX1_HUMAN 2.17 n/a 0.041.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Nerve_Tibial,  Prostate,  Spleen,  Whole_Blood

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