rs10824084 chr10:74151657 T>C

Sequence
ctgggctggtgcgaccccggaggg[T/C]cggaccggagcagcgtctgtaggc
ASB in cell types
foreskin keratinocyte pancreas keratinocytes tibial nerve
ASB for transcription factors
CTCF_HUMAN SNAI2_HUMAN INT11_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.03 2.28 1.003.2·10-43 1.64 0.42 Weak Concordant
SNAI2_HUMAN 2.73 -4.61 1.9·10-41.00 1.50 n/a No Hit
INT11_HUMAN n/a 2.69 1.006.1·10-4 3.00 n/a n/a
Items per page:
1 – 3 of 3

Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download