rs10824142 chr10:74290249 T>G

Sequence
gcctgcttctttatactcttcctg[T/G]ttttcactctgacttactgtgttt
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.98 n/a 4.2·10-31.00 1.25 -0.86 Weak Concordant
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Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  systolic blood pressure (sbp)
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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