rs10824583 chr10:77859644 A>G
- Sequence
tagcctaggtatggggtagatacc[A/G]tctaagtttgtgtaagcacactca
- ASB in cell types
- T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN PRGR_HUMAN GATA3_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.63 | -0.13 | 1.83 | n/a | No Hit | |||
| PRGR_HUMAN | 1.78 | -0.19 | 1.50 | n/a | No Hit | |||
| GATA3_HUMAN | 2.33 | -0.38 | 1.50 | -0.03 | Weak Concordant | |||
| ESR1_HUMAN | 1.24 | 0.05 | 1.73 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GRASP college completion, fasting blood glucose, fasting insulin, hdl cholesterol change with statins, height, homa-ir, irritible bowel syndrome, ldl cholesterol, lp-pla2 mass, transmission distortion, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood