rs10827886 chr10:38527485 C>G
- Sequence
aactgacttgaatggaatagaatg[C/G]aatggaatggtatgaaatcaaagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) MDA-MB-231ERb(triple negative breast cancer) LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN ESR2_HUMAN HTF4_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.61 | 1.73 | 1.95 | n/a | No Hit | |||
| ESR2_HUMAN | -0.66 | 1.72 | 2.00 | n/a | No Hit | |||
| HTF4_HUMAN | -0.68 | 1.71 | 2.88 | n/a | No Hit | |||
| IKZF2_HUMAN | -5.11 | 2.09 | 3.00 | n/a | n/a | |||
| TRI22_HUMAN | 0.82 | 1.88 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 6