rs10832962 chr11:18634724 C>T
- Sequence
ttctctgggtgtcacgggtaggcg[C/T]ttagatccaaaacggcggcgccac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma) 22RV1 (prostate carcinoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- FOXK2_HUMAN ANDR_HUMAN GCR_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.52 | -4.39 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | -0.76 | 2.39 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.32 | 1.83 | 1.00 | n/a | No Hit | |||
| NRF1_HUMAN | 1.80 | -1.25 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, college completion, coronary artery disease (cad), cystatin c in serum, hdl cholesterol, height, ldl cholesterol, refractive error, total cholesterol, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Stomach, Thyroid, Whole_Blood