rs10836246 chr11:4539910 G>T
- Sequence
agactgaatatgtatctcttctgt[G/T]taacttaagatattttcctatagt
- ASB in cell types
- glioblastoma cells GM10847 (female B-cells Lymphoblastoid Cell Lines) VCaP (prostate carcinoma) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.38 | 1.14 | 1.28 | n/a | No Hit | |||
| FOXA1_HUMAN | n/a | 2.22 | 3.00 | 2.36 | Concordant | |||
| STAG1_HUMAN | -0.15 | 1.01 | 1.21 | n/a | n/a |
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Motif analysis
