rs10836247 chr11:4539995 G>A
- Sequence
tctcccttaagttggaacaatgag[G/A]ttttgaaagtttgtgcatcaaatt
- ASB in cell types
- VCaP (prostate carcinoma) GM10847 (female B-cells Lymphoblastoid Cell Lines) glioblastoma cells GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.26 | 0.89 | 1.26 | n/a | No Hit | |||
| ANDR_HUMAN | 0.43 | 2.18 | 2.40 | 0.22 | Weak Concordant | |||
| FOXA1_HUMAN | -0.61 | 1.36 | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood