rs10838458 chr11:45371454 C>G
- Sequence
cgttttcagaggatctgagaaaaa[C/G]ccggcagggttgatggcagctctt
- ASB in cell types
- A549 (lung carcinoma) erythroid cells T47D (invasive ductal carcinoma) GBM39 (Human brain tumor)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| A549 (lung carcinoma) | 0.26 | 1.38 | 2.00 | |||
| erythroid cells | n/a | 3.56 | 2.00 | |||
| T47D (invasive ductal carcinoma) | 0.54 | 0.96 | 1.10 | |||
| GBM39 (Human brain tumor) | 1.47 | -2.68 | 2.00 | |||
| NALM-6 (adult B acute lymphoblastic leukemia) | 1.59 | -0.99 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood