rs10838599 chr11:46357158 G>T
- Sequence
aggcctagcaggggctgagtcagg[G/T]actcggatgtgaaagaagagactg
- ASB in cell types
- monocytes from periferal blood macrophages EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- SRBP2_HUMAN CEBPB_HUMAN SMRC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 3.09 | n/a | 3.00 | 3.01 | Discordant | |||
| CEBPB_HUMAN | 1.42 | 0.60 | 1.80 | n/a | No Hit | |||
| SMRC1_HUMAN | 2.19 | -1.71 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis