rs10838610 chr11:46664710 G>A
- Sequence
tcatctgtccctaacccctatcac[G/A]tcaggccccctgcactgtgggcat
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts K562 (myelogenous leukemia)
- ASB for transcription factors
- GATA1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | -5.64 | 3.30 | 2.00 | 0.12 | Weak Concordant | |||
| SMCA4_HUMAN | 1.66 | -0.80 | 1.75 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP eye color, hdl cholesterol, ldl cholesterol, maternal transmission distortion, total cholesterol, transmission distortion, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid