rs10838674 chr11:5815627 A>G
- Sequence
ttggacacttgtgcccttttggca[A/G]aaatgtaaaatgctacagctgcgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) spleen
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | n/a | 2.49 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.98 | 1.82 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Lung, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Testis