rs10838675 chr11:5815743 T>C

Sequence
tattgcgtgagatccccaggagaa[T/C]tgaaatcagtatgttgaagaggtg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes
ASB for transcription factors
IKZF2_HUMAN ARNT_HUMAN STAT1_HUMAN MEF2B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -1.67 2.05 1.007.8·10-4 1.00 n/a n/a
ARNT_HUMAN -2.74 3.05 1.009.5·10-4 1.00 n/a No Hit
STAT1_HUMAN -0.91 2.79 0.802.5·10-3 3.00 0.49 Weak Concordant
MEF2B_HUMAN 1.29 -1.29 0.011.00 1.00 n/a No Hit
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Motif analysis

STAT1_HUMAN Weak Concordant
STAT1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Lung,  Nerve_Tibial,  Pituitary,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis

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